tigre Quick Guide
نویسندگان
چکیده
The tigre package implements our methodology of Gaussian process differential equation models for analysis of gene expression time series from single input motif networks. The package can be used for inferring unobserved transcription factor (TF) protein concentrations from expression measurements of known target genes, or for ranking candidate targets of a TF. The purpose of this quick guide is to present a small subset of examples from the User Guide that can be run very quickly. For a more comprehensive (although slower-running) presentation, please refer to the tigre User Guide.
منابع مشابه
tigre: Transcription factor inference through gaussian process reconstruction of expression for bioconductor
UNLABELLED tigre is an R/Bioconductor package for inference of transcription factor activity and ranking candidate target genes from gene expression time series. The underlying methodology is based on Gaussian process inference on a differential equation model that allows the use of short, unevenly sampled, time series. The method has been designed with efficient parallel implementation in mind...
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